Theoretical Article
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Comparison of In Silico AChE Inhibitory Potentials of Some Donepezil Analogues

Year 2024, Volume: 4 Issue: 2, 60 - 63, 23.04.2024

Abstract

Cholinesterases are important in ensuring hemostasis in our body. Excessive increase in cholinesterase function causes various cholinergic dysfunctions. Alzheimer's is a disease characterized by loss of cholinergic activity, which is especially common in the elderly. One of the cholinesterase inhibitors most commonly used to stop the progression of Alzheimer's disease is donepezil. Due to some side effects of donepezil, the synthesis and design of new analogues that may be alternatives to donepezil are reported in the literature. In this study, molecular docking studies were performed to compare the in silico AChE inhibitory potential of some new structural analogs of donepezil. Molecular docking studies were performed using Autodock4.2 tools. In this study, the hypothesis emerges that especially compound 1 and compound 5 have the potential to inhibit AChE at least as much as donepezil. In silico docking studies showed that donepezil derivatives designed with bioisosteres of the piperidine ring in donepezil have high binding affinity towards acetylcholine esterase. These results need to be confirmed by synthesis of the donepezil analogues designed in the study and in vitro activity measurements.

References

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  • 2. Roy A, Fields WC, Rocha-Resende C, et al. Cardiomyocyte-secreted acetylcholine is required for maintenance of homeostasis in the heart. The FASEB Journal. 2013;27(12):5072. [CrossRef]
  • 3. Hasselmo ME. The role of acetylcholine in learning and memory. Current Opinion in Neurobiology. 2006;16(6):710-715. [CrossRef]
  • 4. A. S. Acetylcholine. Oxford: Academic Press. 2014;49-50. [CrossRef]
  • 5. Krsti DZ, Lazarevi T, Bond A, Vasi V. Acetylcholinesterase inhibitors: Pharmacology and toxicology. Curr Neuropharmacol. 2013;11(3):315-35. [CrossRef]
  • 6. Andrade-Jorge E, Reyes-Vallejo N, Contreras-Cruz DA, et al. Synthesis, in silico, and evaluation of AChE inhibitory activity of N-phthaloylphenylglycine derivatives as potential anti-Alzheimer’s agents. Medicinal Chemistry Research. 2023;32(11):2405-2418. [CrossRef]
  • 7. Iqbal J, Mallhi AI, ur Rehman A, et al. Design and synthesis of various 1, 3, 4-oxadiazoles as AChE and LOX enzyme inhibitors. Heterocyclic Communications. 2023;29(1):20220169. [CrossRef]
  • 8. Drozdowska D, Maliszewski D, Wróbel A, Ratkiewicz A, Sienkiewicz M. New Benzamides as Multi-Targeted Compounds: A Study on Synthesis, AChE and BACE1 Inhibitory Activity and Molecular Docking. International Journal of Molecular Sciences. 2023;24(19):14901. [CrossRef]
  • 9. Palimariciuc M, Balmus I-M, Gireadă B, et al. The Quest for Neurodegenerative Disease Treatment—Focusing on Alzheimer’s Disease Personalised Diets. Current Issues in Molecular Biology. 2023;45(2):1519-1535. [CrossRef]
  • 10. Singh YP, Kumar N, Chauhan BS, Garg P. Carbamate as a potential anti‐Alzheimer's pharmacophore: A review. Drug Development Research. 2023;84(8):1624-1651. [CrossRef]
  • 11. Nair SS, Shafreen RB, Al Maskari SSN, et al. An In-silico Approach to Identify Potential Drug Molecules for Alzheimer’s Disease: A Case Involving Four Therapeutic Targets. Letters in Drug Design & Discovery. 2022;19(6):541-548. [CrossRef]
  • 12. Koly HK, Sutradhar K, Rahman MS. Acetylcholinesterase inhibition of Alzheimer’s disease: Identification of potential phytochemicals and designing more effective derivatives to manage disease condition. Journal of Biomolecular Structure and Dynamics. 2023;41(22):12532-12544. [CrossRef]
  • 13. Azusada T, Baybay E, Chi J, et al. One-step microwave enhanced synthesis, biological evaluation, and molecular modeling investigations of donepezil analogs as acetylcholinesterase inhibitors. Results in Chemistry. 2024;7:101226. [CrossRef]
  • 14. Kareem RT, Abedinifar F, Mahmood EA, Ebadi AG, Rajabi F, Vessally E. The recent development of donepezil structure-based hybrids as potential multifunctional anti-Alzheimer's agents: highlights from 2010 to 2020. RSC Advances. 2021;11(49):30781-30797. [CrossRef]
  • 15. Mei Y, Yang B. Application of amide bioisosteres in the optimization of lead compounds. Progress in Chemistry. 2016;28(9):1406. [CrossRef]
  • 16. Subbaiah MA, Meanwell NA. Bioisosteres of the phenyl ring: recent strategic applications in lead optimization and drug design. Journal of Medicinal Chemistry. 2021;64(19):14046-14128. [CrossRef]
  • 17. Chernykh AV, Tkachenko AN, Feskov IO, et al. Practical Synthesis of Fluorinated Piperidine Analogues Based on the 2-Azaspiro [3.3] heptane Scaffold. Synlett. 2016;27(12):1824-1827. [CrossRef]
  • 18. Degorce SbL, Bodnarchuk MS, Scott JS. Lowering lipophilicity by adding carbon: azaspiroheptanes, a log D lowering twist. ACS Medicinal Chemistry Letters. 2019;10(8):1198-1204. [CrossRef]
  • 19. Kirichok AA, Tkachuk H, Kozyriev Y, et al. 1‐Azaspiro[3.3]heptane as a Bioisostere of Piperidine. Angewandte Chemie. 2023;135(51):e202311583. [CrossRef]
  • 20. Sheffler DJ, Nedelcovych MT, Williams R, et al. Novel GlyT1 inhibitor chemotypes by scaffold hopping. Part 2: Development of a [3.3. 0]-based series and other piperidine bioisosteres. Bioorganic & Medicinal Chemistry Letters. 2014;24(4):1062-1066. [CrossRef]
  • 21. Dilara E, Yalçin İ. Rasyonel ilaç tasariminda moleküler mekanik ve moleküler dinamik yöntemlerin kullanilma amaci. Journal of Faculty of Pharmacy of Ankara University. 2020;44(2):334-355. [CrossRef]
  • 22. Koca M, Bilginer S. New benzamide derivatives and their nicotinamide/cinnamamide analogs as cholinesterase inhibitors. Molecular Diversity. 2022;26(2):1201-1212. [CrossRef]
  • 23. Azam SS, Abbasi SW. Molecular docking studies for the identification of novel melatoninergic inhibitors for acetylserotonin-O-methyltransferase using different docking routines. Theoretical Biology and Medical Modelling. 2013;10:1-16. [CrossRef]
  • 24. Johnson G, Moore S. The peripheral anionic site of acetylcholinesterase: structure, functions and potential role in rational drug design. Current Pharmaceutical Design. 2006;12(2):217-225. [CrossRef]
  • 25. Peitzika S-C, Pontiki E. A review on recent approaches on molecular docking studies of novel compounds targeting acetylcholinesterase in Alzheimer disease. Molecules. 2023;28(3):1084. [CrossRef]
Year 2024, Volume: 4 Issue: 2, 60 - 63, 23.04.2024

Abstract

References

  • 1. Brown JH, Laiken N. Acetylcholine and Muscarinic Receptors. Primer on the Autonomic Nervous System. Elsevier; 2012:75-78. [CrossRef]
  • 2. Roy A, Fields WC, Rocha-Resende C, et al. Cardiomyocyte-secreted acetylcholine is required for maintenance of homeostasis in the heart. The FASEB Journal. 2013;27(12):5072. [CrossRef]
  • 3. Hasselmo ME. The role of acetylcholine in learning and memory. Current Opinion in Neurobiology. 2006;16(6):710-715. [CrossRef]
  • 4. A. S. Acetylcholine. Oxford: Academic Press. 2014;49-50. [CrossRef]
  • 5. Krsti DZ, Lazarevi T, Bond A, Vasi V. Acetylcholinesterase inhibitors: Pharmacology and toxicology. Curr Neuropharmacol. 2013;11(3):315-35. [CrossRef]
  • 6. Andrade-Jorge E, Reyes-Vallejo N, Contreras-Cruz DA, et al. Synthesis, in silico, and evaluation of AChE inhibitory activity of N-phthaloylphenylglycine derivatives as potential anti-Alzheimer’s agents. Medicinal Chemistry Research. 2023;32(11):2405-2418. [CrossRef]
  • 7. Iqbal J, Mallhi AI, ur Rehman A, et al. Design and synthesis of various 1, 3, 4-oxadiazoles as AChE and LOX enzyme inhibitors. Heterocyclic Communications. 2023;29(1):20220169. [CrossRef]
  • 8. Drozdowska D, Maliszewski D, Wróbel A, Ratkiewicz A, Sienkiewicz M. New Benzamides as Multi-Targeted Compounds: A Study on Synthesis, AChE and BACE1 Inhibitory Activity and Molecular Docking. International Journal of Molecular Sciences. 2023;24(19):14901. [CrossRef]
  • 9. Palimariciuc M, Balmus I-M, Gireadă B, et al. The Quest for Neurodegenerative Disease Treatment—Focusing on Alzheimer’s Disease Personalised Diets. Current Issues in Molecular Biology. 2023;45(2):1519-1535. [CrossRef]
  • 10. Singh YP, Kumar N, Chauhan BS, Garg P. Carbamate as a potential anti‐Alzheimer's pharmacophore: A review. Drug Development Research. 2023;84(8):1624-1651. [CrossRef]
  • 11. Nair SS, Shafreen RB, Al Maskari SSN, et al. An In-silico Approach to Identify Potential Drug Molecules for Alzheimer’s Disease: A Case Involving Four Therapeutic Targets. Letters in Drug Design & Discovery. 2022;19(6):541-548. [CrossRef]
  • 12. Koly HK, Sutradhar K, Rahman MS. Acetylcholinesterase inhibition of Alzheimer’s disease: Identification of potential phytochemicals and designing more effective derivatives to manage disease condition. Journal of Biomolecular Structure and Dynamics. 2023;41(22):12532-12544. [CrossRef]
  • 13. Azusada T, Baybay E, Chi J, et al. One-step microwave enhanced synthesis, biological evaluation, and molecular modeling investigations of donepezil analogs as acetylcholinesterase inhibitors. Results in Chemistry. 2024;7:101226. [CrossRef]
  • 14. Kareem RT, Abedinifar F, Mahmood EA, Ebadi AG, Rajabi F, Vessally E. The recent development of donepezil structure-based hybrids as potential multifunctional anti-Alzheimer's agents: highlights from 2010 to 2020. RSC Advances. 2021;11(49):30781-30797. [CrossRef]
  • 15. Mei Y, Yang B. Application of amide bioisosteres in the optimization of lead compounds. Progress in Chemistry. 2016;28(9):1406. [CrossRef]
  • 16. Subbaiah MA, Meanwell NA. Bioisosteres of the phenyl ring: recent strategic applications in lead optimization and drug design. Journal of Medicinal Chemistry. 2021;64(19):14046-14128. [CrossRef]
  • 17. Chernykh AV, Tkachenko AN, Feskov IO, et al. Practical Synthesis of Fluorinated Piperidine Analogues Based on the 2-Azaspiro [3.3] heptane Scaffold. Synlett. 2016;27(12):1824-1827. [CrossRef]
  • 18. Degorce SbL, Bodnarchuk MS, Scott JS. Lowering lipophilicity by adding carbon: azaspiroheptanes, a log D lowering twist. ACS Medicinal Chemistry Letters. 2019;10(8):1198-1204. [CrossRef]
  • 19. Kirichok AA, Tkachuk H, Kozyriev Y, et al. 1‐Azaspiro[3.3]heptane as a Bioisostere of Piperidine. Angewandte Chemie. 2023;135(51):e202311583. [CrossRef]
  • 20. Sheffler DJ, Nedelcovych MT, Williams R, et al. Novel GlyT1 inhibitor chemotypes by scaffold hopping. Part 2: Development of a [3.3. 0]-based series and other piperidine bioisosteres. Bioorganic & Medicinal Chemistry Letters. 2014;24(4):1062-1066. [CrossRef]
  • 21. Dilara E, Yalçin İ. Rasyonel ilaç tasariminda moleküler mekanik ve moleküler dinamik yöntemlerin kullanilma amaci. Journal of Faculty of Pharmacy of Ankara University. 2020;44(2):334-355. [CrossRef]
  • 22. Koca M, Bilginer S. New benzamide derivatives and their nicotinamide/cinnamamide analogs as cholinesterase inhibitors. Molecular Diversity. 2022;26(2):1201-1212. [CrossRef]
  • 23. Azam SS, Abbasi SW. Molecular docking studies for the identification of novel melatoninergic inhibitors for acetylserotonin-O-methyltransferase using different docking routines. Theoretical Biology and Medical Modelling. 2013;10:1-16. [CrossRef]
  • 24. Johnson G, Moore S. The peripheral anionic site of acetylcholinesterase: structure, functions and potential role in rational drug design. Current Pharmaceutical Design. 2006;12(2):217-225. [CrossRef]
  • 25. Peitzika S-C, Pontiki E. A review on recent approaches on molecular docking studies of novel compounds targeting acetylcholinesterase in Alzheimer disease. Molecules. 2023;28(3):1084. [CrossRef]
There are 25 citations in total.

Details

Primary Language English
Subjects Pharmacology and Pharmaceutical Sciences (Other)
Journal Section Reviews
Authors

Mehmet Koca 0000-0002-1517-5925

Publication Date April 23, 2024
Submission Date February 1, 2024
Acceptance Date April 10, 2024
Published in Issue Year 2024 Volume: 4 Issue: 2

Cite

EndNote Koca M (April 1, 2024) Comparison of In Silico AChE Inhibitory Potentials of Some Donepezil Analogues. Pharmata 4 2 60–63.

Content of this journal is licensed under a Creative Commons Attribution NonCommercial 4.0 International License

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