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Genome Editing Technologies and its Applications in Plants

Year 2019, Volume: 2 Issue: 1, 113 - 133, 30.03.2019

Feyza Tufan

Abstract

Climate change, decreasing agricultural fields, increasing biotic and abiotic stress factors are major obstacles for agriculture and food production. In order to secure production and food safety against the rapid increase in global population and unpredictable climatic conditions, products with higher tolerance to biotic and abiotic stresses are needed. Genome editing technologies have the potential to produce high yields of products under biotic and abiotic stress conditions. In this review, an overview of genome editing technologies will be presented, and the recent genome editing applications with CRISPR/Cas9 systems in plants will be mentioned.

References

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Genom Düzenleme Teknolojileri ve Bitkilerdeki Uygulamaları

Year 2019, Volume: 2 Issue: 1, 113 - 133, 30.03.2019

Feyza Tufan

Abstract

İklim değişiklikleri, tarım arazilerinin azalması, biyotik ve abiyotik stres etmenlerinin artması tarım ve gıda üretimi için önemli engeller arasındadır. Üretim ve gıda
güvenliğinin, küresel nüfustaki hızlı artış ve öngörülemeyen iklim koşulları karşısında güvence altına alınması için biyotik ve abiyotik streslere daha fazla tolerans
gösteren ürünlere ihtiyaç duyulmaktadır. Genom düzenleme teknolojileri, biyotik ve
abiyotik stres koşulları altında ürünlerin yüksek verimde üretilmesine yardımcı olma
potansiyeline sahiptir. Bu derlemede, genom düzenleme teknolojilerine genel bir bakış sunulacak olup, bitkilerde CRISPR/Cas9 ile yapılan son genom düzenleme uygulamalarına değinilecektir.

Keywords

Genom düzenleme teknolojileri Bitkilerde genom düzenleme CRISPR/Cas sistemleri

References

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  • [2] Kuromori, T., Wada, T., Kamiya, A., Yuguchi, M., Yokouchi, T., Imura, Y., Takabe, H., Sakurai, T., Akiyama, K., Hirayama, T., Okada, K, Shinozaki, K., A trial of phenome analysis using 4000 Ds-insertional mutants in genecoding regions of Arabidopsis. The Plant Journal, 47, (2006), 640-651.
  • [3] Wu, C., Li, X., Yuan, W., Chen, G., Kilian, A., Li, J., Xu, C., Li, X., Zhou, D. X., Wang, S, Zhang, Q., Development of enhancer trap lines for functional analysis of the rice genome. The Plant Journal, 35, (2003), 418-427.
  • [4] Yang Y., Li Y., and Wu C., Genomic resources for functional analyses of the rice genome. Current Opinion in Plant Biology, 16, (2013), 157-63.
  • [5] Herrera-Estrella, L., Depicker, A., Van Montagu, M., and Schell, J. Expression of chimaeric genes transferred into plant cells using a Ti-plasmid-derived vector. Nature, 303(5914), (1983), 209.
  • [6] Bevan, M. W., Flavell, R. B., Chilton, M.D. A chimaeric antibiotic resistance gene as a selectable marker for plant cell transformation.. Nature, 304, (1983), 184-187.
  • [7] Fraley, R. T., Roger, S. G., Horsch, R. B., Sanders P. S., Flick, J. S., Adams, S. P., Bittner, M. L., Brand, L. A., Fink, C. L., Fry, J. S., Galluppi, G. R., Goldberg, S. B., Hoffman, N. L. and Woo, S. C., Expression of bacterial genes in plant cells. Proceedings of the National Academy of Sciences, 80, (1983), 4803- 4807.
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  • [9] Garg, A. K., Kim, J. K., Owens, T. G., Ranwala, A. P., Do Choi, Y., Kochian, L. V., and Wu, R. J., Trehalose accumulation in rice plants confers high tolerance levels to different abiotic stresses. Proceedings of the National Academy of Sciences, 99(25), (2002), 15898-15903.
  • [10] de las Mercedes Dana, M., Pintor-Toro, J. A., Cubero, B., Transgenic tobacco plants overexpressing chitinases of fungal origin show enhanced resistance to biotic and abiotic stress agents. Plant Physiology, 142(2), (2006), 722-730.
  • [11] Knäblein, J., Plant‐based expression of biopharmaceuticals, Reviews in Cell Biology and Molecular Medicine, (2006).
  • [12] Durai, S., Mani, M., Kandavelou, K., Wu, J., Porteus, M. H., Chandrasegaran, S., Zinc finger nucleases: Custom-designed molecular scissors for genome engineering of plant and mammalian cells. Nucleic Acids Research, 33, (2005), 5978-5990.
  • [13] Puchta, H., The repair of double-strand breaks in plants: mechanisms and consequences for genome evolution. Journal of Experimental Botany, 56, (2005), 1-14.
  • [14] Lin, S., Staahl, B. T., Alla, R. K., and Doudna, J. A., Enhanced homology-directed human genome engineering by controlled timing of CRISPR/Cas9 delivery. Elife, 3, (2014), e04766.
  • [15] Puchta, H., Applying CRISPR/Cas for genome engineering in plants: the best is yet to come. Current Opinion in Plant Biology, 36, (2017), 1-8.
  • [16] Smith, J., Grizot, S., Arnould, S., Duclert, A., Epinat, J. C., Chames, P., Prieto, J., Redondo, P., Blanco, F. J., Bravo, J., Montoya, G., Pâques, F. and Duchateau, P., A combinatorial approach to create artificial homing endonucleases cleaving chosen sequences. Nucleic Acids Research, 34, (2006), e149,5.
  • [17] D’Halluin, K., Vanderstraeten, C., Stals, E., Cornelissen, M., and Ruiter, R.,Homologous recombination: a basis for targeted genome optimization in crop species such as maize. Plant Biotechnology Journal, 6(1), (2008), 93-102.
  • [18] Gao, H., Smith, J., Yang, M., Jones, S., Djukanovic, V., Nicholson, M. G. and Lyznik, L. A. Heritable targeted mutagenesis in maize using a designed endonuclease. The Plant Journal, 61(1), (2010),176-187.
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  • [22] Zhang, F., Voytas, D. F., Targeted mutagenesis in Arabidopsis using zinc-finger nucleases. In Plant Chromosome Engineering), Humana Press, (pp. 167-177), (2011), Totowa, NJ.
  • [23] Petolino, J. F.,Genome editing in plants via designed zinc finger nucleases. In Vitro Cellular & Developmental Biology – Plant, 51, (2015), 1-8.
  • [24] Kumar, S., AlAbed, D., Worden, A., Novak, S., Wu, H., Ausmus, C., Beck, M., Robinson, H., Minicks, T., Hemingway, D., Lee, R., Skaggs, N., Wang, L., Marri, P., Gupta, M, A modular gene targeting system for sequential transgene stacking in plants. Journal of Biotechnology, 207, (2015),12-20.
  • [25] Samanta, M. K., Dey, A., and Gayen, S., CRISPR/Cas9: an advanced tool for editing plant genomes. Transgenic Research, 25(5), (2016), 561-573.
  • [26] Boch, J., Scholze, H., Schornack, S., Landgraf, A., Hahn, S., Kay, S., Lahaye, T., Nickstadt, A., and Bonas, U., Breaking the code of DNA binding specificity of TAL-type III effectors. Science, 326, (2009), 1509-1512.
  • [27] Sun, N., and Zhao, H., A single-chain TALEN architecture for genome engineering. Molecular BioSystems, 10(3), (2014), 446-453.
  • [28] Cermak, T., Doyle, E. L., Christian, M., Wang, L., Zhang, Y., Schmidt, C., Baller, J. A., Somia, N. V., Bogdanove, A. J. and Voytas, D. F., Efficient design and assembly of custom TALEN and other TAL effectorbased constructs for DNA targeting. Nucleic Acids Research, 39, (2011), 82.
  • [29] Li, T., Liu, B., Spalding, M. H., Weeks, D. P., and Yang, B., High-efficiency TALEN-based gene editing produces disease-resistant rice. Nature Biotechnology, 30, (2012), 390-392.
  • [30] Zhang, Y., Zhang, F., Li, X., Baller, J. A., Qi, Y., Starker, C. G., Bogdanove, A. J., Voytas, D. F., Transcription activator-like effector nucleases enable efficient plant genome engineering. Plant Physiology, 161, (2013), 20-27.
  • [31] Shan, Q, Wang, Y, Chen, K, Liang, Z., Li, J., Zhang, Y., Zhang, K., Liu, J., Voytas, D. F., Zheng, X., Zhang, Y, Gao C., Rapid and efficient gene modification in rice and Brachypodium using TALENs. Molecular Plant, 6, (2013), 1365- 1368.
  • [32] Wendt, T., Holm, P. B., Starker, C. G., et al., TAL effector nucleases induce mutations at a pre-selected location in the genome of primary barley transformants. Plant Molecular Biology, 83 (2013), 279-285.
  • [33] Char, S. N., Unger-Wallace, E., Frame, B., Briggs, S. A., Main, M., Spalding, M. H., Vollbrecht, E., Wang, K., Yang, B., Heritable site-specific mutagenesis using TALENs in maize. Plant Biotechnol Journal, 13, (2015),1002-1010.
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  • [38] Masepohl, B., Gorlitz, K. and Bohme, H., Long tandemly repeated repetitive (LTRR) sequences in the filamentous cyanobacterium Anabaena sp. PCC 7120. Biochim. Biophys. Acta 1307, (1996), 26-30.
  • [39] Hoe, N., Nakashima, K., Grigsby D., Pan, X., Dou, S. J., Naidich, S., Garcia M., Kahn E., Bergmire-Sweat, D, and Musser, J. M., Rapid molecular genetic subtyping of serotype M1 group A Streptococcus strains. Emerging Infectious Diseases journal, 5, (1999), 254-263.
  • [40] Jansen, R., Embden, J. D., Gaastra, W. and Schouls, L. M. Identification of genes that are associated with DNA repeats in prokaryotes. Molecular Microbiology, 43, (2002), 1565-1575.
  • [41] Pourcel, C., Salvignol, G., and Vergnaud, G., CRISPR elements in Yersinia pestis acquire new repeats by preferential uptake of bacteriophage DNA, and provide additional tools for evolutionary studies. Microbiology, 151, (2005), 653- 663.
  • [42] Bolotin, A., Quinquis, B., Sorokin, A., and Ehrlich, S.D., Clustered regularly interspaced short palindrome repeats (CRISPRs) have spacers of extrachromosomal origin. Microbiology, 151, (2005), 2551-2561.
  • [43] Mojica, F.J., Dı´ez-Villasen˜ or, C., Garcı´a-Martı´nez, J., and Soria, E., Intervening sequences of regularly spaced prokaryotic repeats derive from foreign genetic elements. Journal of Molecular Evolution, 60, (2005), 174-182.
  • [44] Amitai, G., and Sorek, R., CRISPR–Cas adaptation: insights into the mechanism of action. Nature Reviews Microbiology 14(2), (2016), 67.
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There are 60 citations in total.

Details

Primary Language Turkish
Journal Section Articles
Authors

Feyza Tufan

Publication Date March 30, 2019
Published in Issue Year 2019 Volume: 2 Issue: 1

Cite

APA Tufan, F. (2019). Genom Düzenleme Teknolojileri ve Bitkilerdeki Uygulamaları. Haliç Üniversitesi Fen Bilimleri Dergisi, 2(1), 113-133.

T. C. Haliç University Journal of Science